Software and Datasets
CNAnorm – an R package to perform normalisation of copy number from next generation sequence data, taking into account tumour cell content and possible aneuploid genome size.
GH-index – R code to use with CNAnorm to calculate G-stat, H-stat and GH index from copy number data.
PRISMAD – Polymorphism Rates Indicate Somatic Mutations As Drivers. A tool for annotating genes as candidates for harbouring somatic driver mutations. The scripts and data used for this software are available here.